60S ribosomal protein L17

Protein found in humans
RPL17
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

4UG0, 4V6X, 5AJ0, 4V5Z, 4UJD, 5A8L, 4D67, 3J92, 4D5Y, 4UJE, 4UJC

Identifiers
AliasesRPL17, L17, PD-1, RPL23, ribosomal protein L17
External IDsOMIM: 603661 MGI: 2448270 HomoloGene: 115574 GeneCards: RPL17
Gene location (Human)
Chromosome 18 (human)
Chr.Chromosome 18 (human)[1]
Chromosome 18 (human)
Genomic location for RPL17
Genomic location for RPL17
Band18q21.1Start49,488,453 bp[1]
End49,492,523 bp[1]
Gene location (Mouse)
Chromosome 18 (mouse)
Chr.Chromosome 18 (mouse)[2]
Chromosome 18 (mouse)
Genomic location for RPL17
Genomic location for RPL17
Band18|18 E3Start75,131,629 bp[2]
End75,136,452 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right uterine tube

  • endometrium

  • anterior pituitary

  • Achilles tendon

  • left lobe of thyroid gland

  • body of pancreas

  • canal of the cervix

  • cerebellar hemisphere

  • islet of Langerhans

  • right lobe of thyroid gland
Top expressed in
  • uterus

  • spleen

  • thymus

  • ganglionic eminence

  • lens

  • zone of skin

  • pancreas

  • bone marrow

  • ovary

  • ileum
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • protein binding
  • structural constituent of ribosome
  • RNA binding
Cellular component
  • cytosol
  • ribosome
  • large ribosomal subunit
  • intracellular anatomical structure
  • cytosolic large ribosomal subunit
  • nucleus
Biological process
  • viral transcription
  • SRP-dependent cotranslational protein targeting to membrane
  • translational initiation
  • nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
  • rRNA processing
  • protein biosynthesis
  • cytoplasmic translation
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6139

319195

Ensembl

ENSG00000265681

ENSMUSG00000062328

UniProt

P18621

Q9CPR4
Q6ZWZ7

RefSeq (mRNA)
NM_001199345
NM_000985
NM_001035006
NM_001199340
NM_001199341

NM_001199342
NM_001199343
NM_001199344

NM_001002239

RefSeq (protein)
NP_000976
NP_001030178
NP_001186269
NP_001186270
NP_001186271

NP_001186272
NP_001186273
NP_001186274
NP_001356484
NP_001356485
NP_001356486
NP_001356487
NP_001356489
NP_001356490
NP_001356491
NP_001356492

NP_001002239
NP_001392893
NP_001392894
NP_001392895

Location (UCSC)Chr 18: 49.49 – 49.49 MbChr 18: 75.13 – 75.14 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Large ribosomal subunit protein uL22 is a protein that in humans is encoded by the RPL17 gene.[5][6][7]

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L22P family of ribosomal proteins. It is located in the cytoplasm. This gene has been referred to as RPL23 because the encoded protein shares amino acid identity with ribosomal protein L23 from Haloarcula marismortui; however, its official symbol is RPL17. Two alternative splice variants have been observed, each encoding the same protein. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome.[7]

See also

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000265681 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000062328 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Mager DL, Freeman JD (Oct 1990). "A human gene related to the ribosomal protein L23 gene of Halobacterium marismortui". Nucleic Acids Res. 18 (17): 5301. doi:10.1093/nar/18.17.5301. PMC 332174. PMID 2402465.
  6. ^ Kenmochi N, Kawaguchi T, Rozen S, Davis E, Goodman N, Hudson TJ, Tanaka T, Page DC (Aug 1998). "A map of 75 human ribosomal protein genes". Genome Res. 8 (5): 509–23. doi:10.1101/gr.8.5.509. PMID 9582194.
  7. ^ a b "Entrez Gene: RPL17 ribosomal protein L17".

Further reading

  • Wool IG, Chan YL, Glück A (1996). "Structure and evolution of mammalian ribosomal proteins". Biochem. Cell Biol. 73 (11–12): 933–47. doi:10.1139/o95-101. PMID 8722009.
  • Andersen JS, Lyon CE, Fox AH, et al. (2002). "Directed proteomic analysis of the human nucleolus". Curr. Biol. 12 (1): 1–11. Bibcode:2002CBio...12....1A. doi:10.1016/S0960-9822(01)00650-9. PMID 11790298. S2CID 14132033.
  • Yoshihama M, Uechi T, Asakawa S, et al. (2002). "The human ribosomal protein genes: sequencing and comparative analysis of 73 genes". Genome Res. 12 (3): 379–90. doi:10.1101/gr.214202. PMC 155282. PMID 11875025.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Matsuda A, Suzuki Y, Honda G, et al. (2003). "Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways". Oncogene. 22 (21): 3307–18. doi:10.1038/sj.onc.1206406. PMID 12761501. S2CID 38880905.
  • Odintsova TI, Müller EC, Ivanov AV, et al. (2004). "Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing". J. Protein Chem. 22 (3): 249–58. doi:10.1023/A:1025068419698. PMID 12962325. S2CID 10710245.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.

External links

  • Overview of all the structural information available in the PDB for UniProt: P18621 (Human 60S ribosomal protein L17) at the PDBe-KB.
  • v
  • t
  • e
Proteins
Initiation factor
Bacterial
Mitochondrial
Archaeal
  • aIF1
  • aIF2
  • aIF5
  • aIF6
Eukaryotic
eIF1
eIF2
eIF3
eIF4
eIF5
eIF6
Elongation factor
Bacterial/​Mitochondrial
Archaeal/​Eukaryotic
Release factor
Ribosomal Proteins
Cytoplasmic
60S subunit
40S subunit
Mitochondrial
39S subunit
28S subunit
Other concepts
Stub icon

This protein-related article is a stub. You can help Wikipedia by expanding it.

  • v
  • t
  • e