AP5Z1

Protein-coding gene in the species Homo sapiens
AP5Z1
Identifiers
AliasesAP5Z1, KIAA0415, SPG48, zeta, adaptor related protein complex 5 zeta 1 subunit, adaptor related protein complex 5 subunit zeta 1
External IDsOMIM: 613653; MGI: 1924908; HomoloGene: 18213; GeneCards: AP5Z1; OMA:AP5Z1 - orthologs
Gene location (Human)
Chromosome 7 (human)
Chr.Chromosome 7 (human)[1]
Chromosome 7 (human)
Genomic location for AP5Z1
Genomic location for AP5Z1
Band7p22.1Start4,775,615 bp[1]
End4,794,397 bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for AP5Z1
Genomic location for AP5Z1
Band5|5 G2Start142,449,699 bp[2]
End142,464,465 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • granulocyte

  • tendon of biceps brachii

  • buccal mucosa cell

  • skin of leg

  • right adrenal cortex

  • mucosa of transverse colon

  • spleen

  • left adrenal gland

  • left adrenal cortex

  • sural nerve
Top expressed in
  • otic vesicle

  • granulocyte

  • yolk sac

  • Rostral migratory stream

  • Paneth cell

  • lumbar subsegment of spinal cord

  • calvaria

  • right kidney

  • fossa

  • mesenteric lymph nodes
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • protein binding
Cellular component
  • cytoplasm
  • AP-5 adaptor complex
  • AP-type membrane coat adaptor complex
  • nucleus
  • nucleoplasm
  • nuclear speck
Biological process
  • protein transport
  • endosomal transport
  • double-strand break repair via homologous recombination
  • DNA repair
  • cellular response to DNA damage stimulus
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

9907

231855

Ensembl

ENSG00000242802

ENSMUSG00000039623

UniProt

O43299

Q3U829

RefSeq (mRNA)

NM_014855
NM_001364858

NM_172725

RefSeq (protein)

NP_055670
NP_001351787

NP_766313

Location (UCSC)Chr 7: 4.78 – 4.79 MbChr 5: 142.45 – 142.46 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

AP-5 complex subunit zeta (AP5Z1) is a protein that in humans is encoded by the AP5Z1 gene.[5]

Function

The protein encoded by this gene is one of two large subunits of the AP5 adaptor complex. Damaging variants in this gene are associated with SPG48, a type of hereditary spastic paraplegia.[6][7]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000242802 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000039623 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Hirst, Jennifer; Barlow, Lael D.; Francisco, Gabriel Casey; Sahlender, Daniela A.; Seaman, Matthew N. J.; Dacks, Joel B.; Robinson, Margaret S. (2011-10-11). "The fifth adaptor protein complex". PLOS Biology. 9 (10): e1001170. doi:10.1371/journal.pbio.1001170. ISSN 1545-7885. PMC 3191125. PMID 22022230.
  6. ^ Słabicki, Mikołaj; Theis, Mirko; Krastev, Dragomir B.; Samsonov, Sergey; Mundwiller, Emeline; Junqueira, Magno; Paszkowski-Rogacz, Maciej; Teyra, Joan; Heninger, Anne-Kristin; Poser, Ina; Prieur, Fabienne (2010-06-29). "A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia". PLOS Biology. 8 (6): e1000408. doi:10.1371/journal.pbio.1000408. ISSN 1545-7885. PMC 2893954. PMID 20613862.
  7. ^ Hirst, Jennifer; Madeo, Marianna; Smets, Katrien; Edgar, James R.; Schols, Ludger; Li, Jun; Yarrow, Anna; Deconinck, Tine; Baets, Jonathan; Van Aken, Elisabeth; De Bleecker, Jan (2016-08-25). "Complicated spastic paraplegia in patients with AP5Z1 mutations (SPG48)". Neurology. Genetics. 2 (5): e98. doi:10.1212/NXG.0000000000000098. ISSN 2376-7839. PMC 5001803. PMID 27606357.


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